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Clustal

Full software

Clustal 2 presents here two versions: Clustal Omega is the latest version of Clustal. This tools is fast and scalable with the possibility to align hundreds of thousands of sequences in a few hours.  visit here. ClustalW2 is the classical Clustal . ClustalW2 comes in two versions: the command-line version ClustalW and the graphical version ClustalX. …

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ClustalW2

Sequences

ClustalW2 is a multiple sequence alignment online tool provided by EMBL-EBI.

Microarray databases

Databases

Recommended microarray databases: ArrayExpress (European Bioinformatics Institute) – visit here Gene Expression Omnibus (National Center for Biotechnology Information) – visit here Stanford Microarray Database (SMD) (Stanford University) – visit here

RNA databases

Databases

Among the available free online RNA databases we recommend the following:  Rfam, a database of RNA families – visit here mirBase, the microRNA database – visit here snoRNAdb, a database of snoRNAs – visit here

Genome databases

Databases

Among the available free online genome databases, we recommend the following: NCBI Genome – visit here USCS Genome Browser Gateway – visit here Ensembl Genome Browser – visit here The Gene Indix Project – visit here

GraphPad Prism (statistics)

Trial software

GraphPad Prism offers a combination of biostatistics, scientific graphing and curve fitting (nonlinear regression). Use the tutorials to select the appropiate statistical test and analyze your data. Try this software for 30 days on www.graphpad.com

Simple Interactive Statistical Analysis

Biostatistics

After the procedure selection and fill in the form by the user, Simple Interactive Statistical Analysis (SISA) analyzes statistically the provided data. SISA also provides a friendly user guide to helps in the statistical test choice.

FeatureMap3D

Protein Analysis

FeatureMap3D the structural data from PDB (Protein Data Bank) with the protein sequence-based information. With this tool the user can analyze the sequence conservation onto homologous structures in the PDB and map protein features. The FeatureMap3D allows the user to provide protein feature annotation such as alternative splicing or phosphorylation sites.