Clustal

Clustal 2 presents here two versions:

Clustal Omega is the latest version of Clustal. This tools is fast and scalable with the possibility to align hundreds of thousands of sequences in a few hours.  visit here.

ClustalW2 is the classical Clustal . ClustalW2 comes in two versions: the command-line version ClustalW and the graphical version ClustalX.  visit here.